Breakfast Egg Muffins

Featured in: Weekend Blissful Bakes

These savory breakfast egg muffins combine whisked eggs with melted cheddar cheese, crispy bacon, and vibrant bell peppers baked to golden perfection. Ready in 35 minutes, they're ideal for meal prep—store in the fridge for up to 5 days or freeze for later. Simply reheat and enjoy a warm, protein-packed handheld breakfast that's gluten-free and endlessly customizable with your favorite vegetables and proteins.

Updated on Sun, 01 Feb 2026 09:54:00 GMT
Golden-brown Breakfast Egg Muffins with melted cheddar, bacon, and bell peppers on a rustic wooden board, served warm. Save
Golden-brown Breakfast Egg Muffins with melted cheddar, bacon, and bell peppers on a rustic wooden board, served warm. | cocoabluff.com

One Sunday morning, I pulled a batch of these egg muffins from the oven and the whole kitchen smelled like a diner—smoky bacon, sharp cheddar, the faint sweetness of bell peppers turning golden at the edges. My daughter grabbed one straight from the tin, juggling it between her hands because it was still too hot, and declared it better than anything I'd ever packed in her lunchbox. I realized then that this wasn't just a make-ahead breakfast trick. It was a way to give her something homemade and warm, even on the mornings when we were both running late.

I started making these the week my mornings became a blur of backpacks, coffee mugs, and missing shoes. My son would microwave two muffins, wrap them in a paper towel, and eat them in the car on the way to school. They became our quiet routine, the thing that made chaotic mornings feel a little more manageable. Sometimes I'd switch up the fillings—spinach one week, sausage the next—and he'd always notice, always have an opinion.

Ingredients

  • Large eggs: The base of the muffin, whisked until frothy so they bake up light and airy instead of dense.
  • Milk: Just enough to make the eggs tender and custard-like, not rubbery—I learned this after a too-dry first batch.
  • Shredded cheddar cheese: It melts into pockets of sharp, salty richness and creates those irresistible golden spots on top.
  • Diced bell peppers: Red, green, or yellow all work beautifully, adding sweetness and little bursts of color in every bite.
  • Diced onions: They soften in the oven and add a savory depth that balances the richness of the cheese and bacon.
  • Cooked and crumbled bacon: Smoky, crispy, essential—though sausage or even diced ham work just as well if that's what you have.
  • Salt, black pepper, garlic powder, and paprika: Simple seasonings that wake up the eggs and make every muffin taste intentional, not bland.
  • Cooking spray or olive oil: A light coating on the muffin tin ensures the muffins pop out cleanly without sticking or tearing.

Instructions

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Preheat and prep the tin:
Set your oven to 350°F and generously grease a 12-cup muffin tin with cooking spray or a light brush of olive oil. Don't skip this step or you'll be prying muffins out with a spoon later.
Whisk the egg base:
In a large bowl, whisk together the eggs and milk until the mixture is smooth and slightly frothy—this adds air and makes the muffins fluffier.
Stir in the fillings:
Add the cheddar, bell peppers, onions, bacon, salt, pepper, garlic powder, and paprika, stirring until everything is evenly distributed. The batter should look colorful and chunky.
Fill the muffin cups:
Pour the mixture into each muffin cup, filling them about two-thirds full so they have room to puff up without spilling over.
Bake until set:
Slide the tin into the oven and bake for 18 to 20 minutes, until the tops are lightly golden and a toothpick inserted in the center comes out clean. The edges will pull away slightly from the tin.
Cool and remove:
Let the muffins rest in the tin for 5 minutes to firm up, then run a butter knife around the edges if needed and gently lift them out.
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Savory Breakfast Egg Muffins with fluffy eggs, crisp bacon, and peppers, meal-prepped for a quick on-the-go morning snack. Save
Savory Breakfast Egg Muffins with fluffy eggs, crisp bacon, and peppers, meal-prepped for a quick on-the-go morning snack. | cocoabluff.com

The first time I brought these to a potluck brunch, a friend asked if I'd picked them up from a bakery. I laughed and told her it was just eggs and whatever I had in the fridge, but she didn't believe me until I sent her the recipe later that night. That's when I realized these little muffins had a way of looking much fancier than the effort they actually required.

How to Store and Reheat

Once completely cool, stack the muffins in an airtight container with a paper towel between layers to absorb any moisture, and keep them in the fridge for up to five days. In the morning, pop one in the microwave for 30 seconds and it tastes like it just came out of the oven. I've also frozen full batches—just wrap each muffin individually in plastic wrap, toss them in a freezer bag, and thaw overnight before reheating.

Ways to Make Them Your Own

I've made these with crumbled sausage, diced ham, sautéed mushrooms, fresh spinach, and even leftover roasted vegetables. Some weeks I skip the meat entirely and load them up with zucchini and feta for a lighter option. The base recipe is forgiving enough to handle whatever you're craving or whatever needs to be used up before it goes bad.

Serving Suggestions

These muffins are perfect on their own, but they're even better with a drizzle of hot sauce, a dollop of sour cream, or a spoonful of salsa on the side. I've served them warm on a platter at brunch with fresh fruit and coffee, and I've also wrapped them in foil and handed them out the door on school mornings.

  • Pair with a green smoothie or fresh orange juice for a balanced breakfast.
  • Serve alongside roasted potatoes or a simple mixed greens salad for a light lunch.
  • Pack them in lunchboxes with cherry tomatoes and sliced avocado for an easy, protein-packed meal.
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Freshly baked Breakfast Egg Muffins with cheese and peppers, garnished with chives and served alongside a cup of coffee. Save
Freshly baked Breakfast Egg Muffins with cheese and peppers, garnished with chives and served alongside a cup of coffee. | cocoabluff.com

These egg muffins have become the thing I make when I need breakfast to work for me instead of the other way around. They're simple, they're forgiving, and they taste like someone actually cared enough to cook.

Recipe FAQs

Can I make these egg muffins ahead of time?

Yes, these muffins are perfect for meal prep. Store them in an airtight container in the refrigerator for up to 5 days, or freeze for longer storage. Simply reheat in the microwave before serving.

What can I substitute for bacon?

You can use cooked sausage, diced ham, or go vegetarian by adding spinach, mushrooms, or extra vegetables instead of meat.

How do I prevent the muffins from sticking to the tin?

Thoroughly grease each muffin cup with cooking spray or olive oil before adding the egg mixture. Let them cool for 5 minutes after baking, then gently loosen with a knife if needed.

Can I use different types of cheese?

Absolutely! While cheddar works beautifully, you can experiment with feta, mozzarella, pepper jack, or any cheese you prefer for different flavor profiles.

Are these muffins suitable for gluten-free diets?

Yes, these egg muffins are naturally gluten-free as written. Just be sure to check labels on any processed ingredients like sausage or bacon to ensure they don't contain gluten additives.

What's the best way to reheat frozen egg muffins?

Thaw overnight in the refrigerator, then microwave for 30-60 seconds until heated through. You can also reheat directly from frozen by microwaving for 1-2 minutes.

Breakfast Egg Muffins

Golden egg muffins with cheddar, bacon, and peppers—perfect for meal prep and busy mornings.

Prep Duration
10 minutes
Time to Cook
20 minutes
Time Required
30 minutes
Recipe by Aubrey Gray


Skill Level Easy

Cuisine Type American

Serves 5 Portions

Dietary Details Free from Gluten, Low in Carbs

What You’ll Need

Eggs & Dairy

01 6 large eggs
02 1/2 cup whole milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers (red, green, or yellow)
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil for muffin tin

Directions

Step 01

Preheat Oven: Preheat oven to 350°F.

Step 02

Prepare Muffin Tin: Grease a standard 12-cup muffin tin with cooking spray or olive oil.

Step 03

Combine Wet Ingredients: In a large mixing bowl, whisk together eggs and milk until well combined and slightly frothy.

Step 04

Mix All Components: Stir in cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika until evenly distributed throughout the mixture.

Step 05

Fill Muffin Cups: Pour the mixture into the prepared muffin tin, filling each cup approximately two-thirds full.

Step 06

Bake: Bake for 18 to 20 minutes, or until muffins are set and lightly golden. Insert a toothpick in the center; it should come out clean.

Step 07

Cool and Remove: Remove from oven and allow to cool for 5 minutes. Carefully loosen muffins with a knife if needed and remove from tin.

Step 08

Serve or Store: Serve warm, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in the microwave before serving.

What You Need

  • 12-cup muffin tin
  • Large mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergy Info

Review every item to spot allergens. If unsure, reach out to a healthcare provider.
  • Contains eggs
  • Contains milk and dairy products
  • May contain pork from bacon or sausage depending on protein selection

Nutritional Breakdown (per serving)

This nutrition data is here for reference and shouldn’t substitute for your medical professional’s advice.
  • Calorie Count: 150
  • Fat content: 10 grams
  • Carbohydrates: 2 grams
  • Proteins: 11 grams